readInputFile: Read samples files with different annotation ID
In ppdragondw/Key2Enrich: R package of gene set enrichment analysis

Description Usage Arguments Value Examples

Read samples files with different annotation ID

1	readInputFile(fileName, IDColumn, logFCColumn, IDType)

`fileName`	input file in csv format
`IDColumn`	must be numberic,the column number of sample ID
`logFCColumn`	must be numberic, the column number of sample log fold change
`IDType`	Human: entrezgene, hgnc_symbol, ensembl_gene_id, Mouse: entrezgene, mgi_symbol, ensembl_gene_id, Rat: entrezgene, rgd_symbol, ensembl_gene_id

Sample file in data.frame format

path<-system.file(package = "Key2Enrich")
filePath<-paste(path,"/extdata",sep="")
file<-paste(filePath,sep="","/sampleFile.csv")
entrezgene_sample<-readInputFile(file,IDColumn=1,
                                 logFCColumn=2,IDType="mgi_symbol")
head(entrezgene_sample)