formatInputSample: Format input file to dataframe class with entrez ID, symbol...
In ppdragondw/Key2Enrich: R package of gene set enrichment analysis

Description Usage Arguments Value Examples

Format input file to dataframe class with entrez ID, symbol and ensembl ID

1	formatInputSample(filename, IDColumn, logFCColumn, IDType, inputSpecies)

`filename`	input file in csv format
`IDColumn`	must be numberic,the column number of sample ID
`logFCColumn`	must be numberic, the column number of sample log fold change
`IDType`	Human: entrezgene, hgnc_symbol, ensembl_gene_id, Mouse: entrezgene, mgi_symbol, ensembl_gene_id, Rat: entrezgene, rgd_symbol, ensembl_gene_id
`inputSpecies`	human, mouse, rat

input sample in dataframe class with entrez ID, symbol and ensembl ID

path<-system.file(package = "Key2Enrich")
filePath<-paste(path,"/extdata",sep="")
file<-paste(filePath,sep="","/sampleFile.csv")

inputSample<-formatInputSample(file,
                               IDColumn=1,
                               logFCColumn=2,
                               "mgi_symbol",
                               "mouse")