Reactome2Enrich: Get enrichment matrix of enriched Reactome pathway
In ppdragondw/Key2Enrich: R package of gene set enrichment analysis

Description Usage Arguments Value Examples

Get enrichment matrix of enriched Reactome pathway

1 2	Reactome2Enrich(geneIDs, inputSpecies, adjustMethod, filterValue, imgWidth, imgHeight)

`geneIDs`	gene identifiers
`inputSpecies`	human, mouse, rat
`adjustMethod`	p.adjust.methods, c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none")
`filterValue`	must by numeric, value from 0 to 1
`imgWidth`	the width of export file
`imgHeight`	the height of export file

data in dataframe class with pValue, adjust pValue of significate Reactome pathway

data(inputSample)
inputSample<-as.data.frame(inputSample)
head(inputSample)

reactomePValueMatrix<-Reactome2Enrich(geneIDs=as.character(inputSample$entrezgene),
                                      "mouse","fdr",0.05,15,20)