ExportROIAverages: ExportROIAverages.

In prafols/rMSIproc: MSI Processing in C++

Description

Exports the average spectrum of a group of pixels in a ROI as an ASCII text file. ROI's are defined using Bruker XML files. A single spectrum will be exported for each ROI found in XML file.

Usage

ExportROIAverages(roi_xml_file, img, out_path = getwd(), normalization = NULL)

Arguments

roi_xml_file	a Bruker region XML file.
img	an rMSI object.
out_path	disk path where the results will be stored.
normalization	a text string with the name of desired normalization to apply at output files.

Value

a list with the data set UUID and the pixels ID's exported for each ROI.

prafols/rMSIproc documentation built on Dec. 12, 2021, 7:31 p.m.