export_imzMLpeakList: export_imzMLpeakList.

Description Usage Arguments

View source: R/peakList2imzML.R

Description

Export an rMSIproc peak list as an imzML processed dataset.

Usage

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export_imzMLpeakList(
  peakList,
  posMatrix,
  pixel_size_um,
  filename,
  normalization = rep(1, length(peakList))
)

Arguments

peakList

an rMSIproc peak list object.

posMatrix

an rMSI pos matrix with the pixel coordinates in the image.

pixel_size_um

the image pixel size in microns.

filename

complete path where the imzML and ibd files will be stored (the .imzML extensions must be omited).

normalizations

a numeric vector contaning the normalization value for each pixel (1 by default).


prafols/rMSIproc documentation built on Dec. 12, 2021, 7:31 p.m.