View source: R/peakList2imzML.R
Export an rMSIproc peak list as an imzML processed dataset.
1 2 3 4 5 6 7 | export_imzMLpeakList(
peakList,
posMatrix,
pixel_size_um,
filename,
normalization = rep(1, length(peakList))
)
|
peakList |
an rMSIproc peak list object. |
posMatrix |
an rMSI pos matrix with the pixel coordinates in the image. |
pixel_size_um |
the image pixel size in microns. |
filename |
complete path where the imzML and ibd files will be stored (the .imzML extensions must be omited). |
normalizations |
a numeric vector contaning the normalization value for each pixel (1 by default). |
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