inst/run_scripts/annotationHub.R
In protViz/prora: ORA, sigORA and GSEA functionalities for proteomic data
remotes::install_bioc("AnnotationHub")
library(AnnotationHub)
ah <- AnnotationHub::AnnotationHub()
orgdb <- AnnotationHub::query(ah, c("OrgDb", "maintainer@bioconductor.org"))
specODB <- orgdb[[grep("Homo",orgdb$species)]]
egid <- AnnotationDbi::keys(specODB, "ENTREZID")
select(specODB, egid, c("SYMBOL", "GENENAME", "UNIPROT"), "ENTREZID") %>% dim()
protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.
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remotes::install_bioc("AnnotationHub")
library(AnnotationHub)
ah <- AnnotationHub::AnnotationHub()
orgdb <- AnnotationHub::query(ah, c("OrgDb", "maintainer@bioconductor.org"))
specODB <- orgdb[[grep("Homo",orgdb$species)]]
egid <- AnnotationDbi::keys(specODB, "ENTREZID")
select(specODB, egid, c("SYMBOL", "GENENAME", "UNIPROT"), "ENTREZID") %>% dim()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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