calcGC: Calculate GC content and append to dataframe
In qiuxintao101/scCNV: What the Package Does (One Line, Title Case)
View source: R/supp_functions.R
calcGC R Documentation
Calculate GC content and append to dataframe
Description
This function the GC content of GenomicRanges Tiles and appends it to
an existing dataframe. This function uses the Hsapiens genome from
BSgenome.Hsapiens.UCSC.hg19.
Usage
calcGC(df, tiles, GC_cutoff)
Arguments
df
existing dataframe
tiles
GRanges tiles object
GC_cutoff
Maximum GC content to be included
Value
dataframe containing GC content, count, and frequency.
qiuxintao101/scCNV documentation built on July 31, 2022, 2:10 p.m.
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View source: R/supp_functions.R
| calcGC | R Documentation |
Calculate GC content and append to dataframe
Description
This function the GC content of GenomicRanges Tiles and appends it to an existing dataframe. This function uses the Hsapiens genome from BSgenome.Hsapiens.UCSC.hg19.
Usage
calcGC(df, tiles, GC_cutoff)
Arguments
df |
existing dataframe |
tiles |
GRanges tiles object |
GC_cutoff |
Maximum GC content to be included |
Value
dataframe containing GC content, count, and frequency.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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