getBinMatrix: Calculate read counts in each bin

In qiuxintao101/scCNV: What the Package Does (One Line, Title Case)

Calculate read counts in each bin

Description

This function calculates the read count of specific cells in a framgnets file. These counts are returned as a matrix

Usage

getBinMatrix(cells, df, fragments)

Arguments

cells	.tsv file of cells to include in the calculation
df	dataframe containing GCcontent, peak content and width information
fragments	path to a .tsv.gz fragments file with corresponding .tbi file

Value

A matrix containing the read counts. Row names are features, column names are cells

qiuxintao101/scCNV documentation built on July 31, 2022, 2:10 p.m.