plotCNV: Plot CNV heatmap

In qiuxintao101/scCNV: What the Package Does (One Line, Title Case)

Plot CNV heatmap

Description

This function creates a heatmap using CNV data, where each row is a cell and reach column is a genomic feature. Cells can be clustered together hierarchically (if k_means ==0), or with k-means clustering

Usage

plotCNV(
  fc,
  k_means,
  k_means_cell_cut_off,
  gz,
  project,
  GC_Content = NULL,
  tad = NULL,
  target_t = NULL,
  hc_cluster = 6
)

Arguments

fc	Fold change matrix
k_means	Number of desired clusters k-means (hiearchical if 0)
k_means_cell_cut_off	minimum number of cells for a cluster to be seen
gz	chromosome length data, produced by seqlengths()
project	Name of project
GC_Content	GC content data. See GCplot
tad	tad data. See TADplot
target_t	On-target content data. See ATACplot
hc_cluster	number of hiearchical clusters

Value

creates heatmap and returns corresponding dataframe

qiuxintao101/scCNV documentation built on July 31, 2022, 2:10 p.m.