getGCBackground: Select GC matched background

In qiuxintao101/scCNV: What the Package Does (One Line, Title Case)

Select GC matched background

Description

This function matches each feature to a specified number of its closest GC matched neighbors. A certain number of these neighbors are then sampled to create a GC matched background

Usage

getGCBackground(coverage, df, GC_radius, GC_sample_size)

Arguments

coverage	coverage matrix (as produced by calcCoverage())
df	dataframe containing the GC content of genomic features
GC_radius	half the number of neighbors that will be matched to each feature
GC_sample_size	number of features that will be sampled to produce the background

Value

A matrix containing the names of GC matched features

qiuxintao101/scCNV documentation built on July 31, 2022, 2:10 p.m.