getOverlap: Create offtarget and ontarget reads
In qiuxintao101/scCNV: What the Package Does (One Line, Title Case)
View source: R/supp_functions.R
getOverlap R Documentation
Create offtarget and ontarget reads
Description
This function uses the terminal to find overlap between fragments file and
peaks. Bedtools and Tabix need to be installed in order for this
preprocessing to occur
Usage
getOverlap(fragments_file, peak_path, blacklist_path = NULL)
Arguments
fragments_file
path to the fragments file
peak_path
path to the peaks BED file
blacklist_path
path to a blacklist BED file, if it exists
Value
A list containing the paths to the offtarget and ontarget files
qiuxintao101/scCNV documentation built on July 31, 2022, 2:10 p.m.
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View source: R/supp_functions.R
| getOverlap | R Documentation |
Create offtarget and ontarget reads
Description
This function uses the terminal to find overlap between fragments file and peaks. Bedtools and Tabix need to be installed in order for this preprocessing to occur
Usage
getOverlap(fragments_file, peak_path, blacklist_path = NULL)
Arguments
fragments_file |
path to the fragments file |
peak_path |
path to the peaks BED file |
blacklist_path |
path to a blacklist BED file, if it exists |
Value
A list containing the paths to the offtarget and ontarget files
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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