calcOverlap: Calculate overlap between feature bin and peaks

In qiuxintao101/scCNV: What the Package Does (One Line, Title Case)

Calculate overlap between feature bin and peaks

Description

This function calculates the length of each Genomic feature not occupied by peaks, and checks if the percentage of peaks is above a certain threshold. The lengths and boolean values are appended as columns to the provided dataframe

Usage

calcOverlap(df, tiles, peaks, genome, peak_occ_cutoff)

Arguments

df	dataframe to contain the lengths without peaks
tiles	GRanges tiles object
genome	genetic sequence information
peak_off_cutoff	Maximum percentage of peaks in a given feature

Value

dataframe containing the lengths of features without peaks and column of features above the peak cutoff

qiuxintao101/scCNV documentation built on July 31, 2022, 2:10 p.m.