R/roadmap.R

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

#################################
# mzion -> proteoQ
#################################
# normPSM
#   splitPSM_pq (psmtable.R)
#     TMT_plex (params.R)
#     pad_tmt_channels (psmtable.R)
#     pad_psm_fields (psmtable.R)
#     add_pepseqmod (psmtable.R)
#     annotPrn (utils.R)
#     add_quality_cols (utils.R)
#     annotPeppos (utils.R)
#     add_prot_icover (utils.R)
#     calc_cover (utils.R)
#################################


# psmtable.R:
#   - extract_raws
#   - find_mascot_psmraws
#   - find_mq_psmraws
#   - find_sm_psmraws
# 
#   - my_tolower
#   - my_upper
#   - check_raws