parseGEOSoft: parse GO Soft archives

Description Usage Arguments See Also

View source: R/parsers.R

Description

Parses GEO Soft microarray experiment archives into a data matrix and an ID-probe mapping table. Probes can be further summarized for features with summarizeGEOSoft.

Usage

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parseGEOSoft(file, idcol, only.data = TRUE, valcol = "VALUE",
  title = TRUE, desc = TRUE)

Arguments

file

a GEO Soft archive file (eg. GSE18902_family.soft.gz)

idcol

columns to retrieve from the platform table

only.data

skip all samples without data

valcol

value column (currently only 1 is allowed) in the sample tables

title

if TRUE a sample title will be retrieved

desc

if TRUE, value descriptions in field "#<valcol>" will be retrieved

See Also

summarizeGEOSoft


raim/segmenTools documentation built on Nov. 9, 2018, 5:38 p.m.