removeCircularFeatures | R Documentation |
expandCircularFeatures
searches for circular features by the idTag
added
to ID and type columns in expandCircularFeatures
,
and maps downstream coordinates back to original features.NOT WORKING - Undo expandCircularFeatures
searches for circular features by the idTag
added
to ID and type columns in expandCircularFeatures
,
and maps downstream coordinates back to original features.
removeCircularFeatures(
features,
coorCols = c("chr", "start", "end", "strand"),
idTag = "-circ2",
idCols = c(ID = "ID", type = "type", parent = "parent"),
rmParent = TRUE
)
features |
list of genomic features with coordinates |
coorCols |
ordered string vector providing the column names
of coordinate columns to be used; must be of length 4 and provide in
order: chromosome number (refering to argument |
idTag |
tag used for tagging downstream halves |
idCols |
named vector of column names for feature ID, type,
and feature parent; note that a "parent" column will be removed if
it is (a) empty and (b) argument |
rmParent |
rm the parent column |
expandCircularFeatures
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