seq2nt | R Documentation |
calculate local nucleotide content in moving windows and returns genomeData matrix TODO: move readFasta here and document!
seq2nt(
seq,
window = 100,
step = 1,
abc,
skew = "",
cum = FALSE,
circular = FALSE,
verb = FALSE
)
seq |
a sequence object as returned by |
window |
width of the moving window |
step |
step size |
abc |
sequence letters for which averages are calculated |
skew |
calculate skew for letters 1 and 2 in argument |
cum |
set TRUE to calculate cumulative skew after Grigoriev 1998 NAR |
circular |
treat sequence as circular |
verb |
print progress messages |
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