sortOverlaps: sorts cluster overlap structure by p-values

Description Usage Arguments

View source: R/clusterTools.R

Description

Sorts one dimension of a cluster overlap structure by their p-values along the sorting of the other axis. For each cluster along the pre-sorted (non-selected) axis, the most significant overlaps (p<p.min) are chosen and moved to the top of the matrix. TODO: align axis selection with nomenclature in clusterCluster

Usage

1
sortOverlaps(ovl, p.min = 0.05, axis = 2)

Arguments

ovl

a ‘clusterOverlaps’ object returned by clusterCluster

p.min

significance cutoff during sorting

axis

axis to sort (2 for y-axis/rows, 1 for x-axis/columns)


raim/segmenTools documentation built on Nov. 9, 2018, 5:38 p.m.