tab2gff | R Documentation |
Creates a table with columns as present in gff3 genome
annotation files, including ;-separated attribute lists.
Columns with RGB colors can be used to create snapgene
-specific
note in attributes.
tab2gff(
tab,
columns = c(seqid = "chr", source = "source", type = "type", start = "start", end =
"end", score = "score", strand = "strand", phase = "phase"),
attributes = c(ID = "ID", Name = "name", Alias = "alias", Parent = "parent", color =
"color"),
notes,
sep = "; ",
source = c("chromosome", "plasmid")
)
tab |
input table of genomic features with chromosome coordinate information |
columns |
a named string vector mapping from columns in
|
attributes |
a named string vector mapping from columns in
|
notes |
as |
sep |
separator for attribute list |
source |
identifier of main source feature (chromosome) |
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