Files in rcavalcante/annotatr
Annotation of Genomic Regions to Genomic Annotations
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/annotatr_data_doc.R
R/annotatr_package_doc.R
R/build_annotations.R
R/intersect.R
R/randomize.R
R/read.R
R/summarize.R
R/utils.R
R/visualize.R
README.md
data-raw/create_example_annotations.R
data/annotations.rda
inst/CITATION
inst/NEWS
inst/extdata/Gm12878_Ezh2_peak_annotations.txt.gz
inst/extdata/Gm12878_Ezh2_sorted_scores.narrowPeak.gz
inst/extdata/Gm12878_Stat3_chr2.bed.gz
inst/extdata/IDH2mut_v_NBM_multi_data_chr9.txt.gz
inst/extdata/K562_Cjun_peak_annotations.txt.gz
inst/extdata/test_BED3.bed
inst/extdata/test_BED4.bed
inst/extdata/test_BED5.bed
inst/extdata/test_BED6.bed
inst/extdata/test_annotation_nooverlap.bed
inst/extdata/test_annotations_3.bed
inst/extdata/test_annotations_4.bed
inst/extdata/test_annotations_5.bed
inst/extdata/test_annotations_6.bed
inst/extdata/test_annotations_6_gene.bed
inst/extdata/test_annotations_6_symbol.bed
inst/extdata/test_annotations_6_tx_gene_symbol.bed
inst/extdata/test_annotations_minoverlap.bed
inst/extdata/test_bedGraph.bedGraph
inst/extdata/test_intersect.bed
inst/extdata/test_read_multiple_data_nohead.bed
man/annotate_regions.Rd
man/annotations.Rd
man/annotatr.Rd
man/annotatr_cache.Rd
man/build_ah_annots.Rd
man/build_annotations.Rd
man/build_cpg_annots.Rd
man/build_enhancer_annots.Rd
man/build_gene_annots.Rd
man/build_hmm_annots.Rd
man/build_lncrna_annots.Rd
man/builtin_annotations.Rd
man/builtin_genomes.Rd
man/check_annotations.Rd
man/expand_annotations.Rd
man/get_cellline_from_code.Rd
man/get_cellline_from_shortcut.Rd
man/get_orgdb_name.Rd
man/get_txdb_name.Rd
man/plot_annotation.Rd
man/plot_categorical.Rd
man/plot_coannotations.Rd
man/plot_numerical.Rd
man/plot_numerical_coannotations.Rd
man/randomize_regions.Rd
man/read_annotations.Rd
man/read_regions.Rd
man/reformat_hmm_codes.Rd
man/subset_order_tbl.Rd
man/summarize_annotations.Rd
man/summarize_categorical.Rd
man/summarize_numerical.Rd
man/tidy_annotations.Rd
tests/testthat.R
tests/testthat/test_1_utils.R
tests/testthat/test_2_read.R
tests/testthat/test_3_build_annotations.R
tests/testthat/test_4_intersect.R
tests/testthat/test_5_randomize.R
tests/testthat/test_6_summarize.R
tests/testthat/test_7_visualize.R
vignettes/annotatr-vignette.Rmd
vignettes/annotatr_cpgs.jpeg
vignettes/annotatr_genes.jpeg
