run.phenograph: Clustering the data

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Clustering the data

Description

This function takes an object of class iCellR and finds optimal number of clusters and clusters the data.

Usage

run.phenograph(x = NULL, k = 100, data.type = "pca", dims = 1:10)

Arguments

x	An object of class iCellR.
k	integer; number of nearest neighbours (default:45)
data.type	Choose between "tsne", "pca", "umap", default = "pca".
dims	PCA dimentions to be use for clustering, default = 1:10.

Value

An object of class iCellR.

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.