top.markers: Choose top marker genes

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Choose top marker genes

Description

This function takes the marker genes info if chooses marker gene names for plots.

Usage

top.markers(
  x = NULL,
  topde = 10,
  min.base.mean = 0.2,
  filt.ambig = TRUE,
  cluster = 0
)

Arguments

x	An object of class iCellR.
topde	Number of top differentially expressed genes to be choosen from each cluster, default = 10.
min.base.mean	Minimum base mean of the genes to be chosen, default = 0.5.
filt.ambig	Filter markers that are seen for more than one cluster, default = TRUE.
cluster	Choose a cluster to find markers for. If 0, it would find markers for all clusters, , default = 0.

Value

A set of gene names

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.