forceReverse: Force reversal of a subset of the ordering

In rhondabacher/methylscaper: Visualization of Methylation Data

Force reversal of a subset of the ordering

Description

This reverses a subset of the ordering, as determined by the user. By default, the entire ordering is reversed.

Usage

forceReverse(
  orderObject,
  reverseStart = 1,
  reverseEnd = length(orderObject$order1)
)

Arguments

orderObject	An object of class orderObject, generated with the initialOrder function.
reverseStart	The first index to be included in the reversal.
reverseEnd	The last index to be included in the reversal.

Value

The new complete ordering, with the reversal applied.

Examples

 
data(singlemolecule_example)

orderObj <- initialOrder(singlemolecule_example, Method = "PCA")
# reorder first 50 cells/molecules (rows)
orderObj$order1 <- refineFunction(orderObj, 1, 50) 
orderObj$order1 <- forceReverse(orderObj, 1, 50) 

rhondabacher/methylscaper documentation built on April 18, 2023, 1:47 p.m.