rhondabacher/methylscaper: Visualization of Methylation Data

methylscaper is an R package for processing and visualizing data jointly profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The package supports both single-cell and single-molecule data, and a common interface for jointly visualizing both data types through the generation of ordered representational methylation-state matrices. The Shiny app allows for an interactive seriation process of refinement and re-weighting that optimally orders the cells or DNA molecules to discover methylation patterns and nucleosome positioning.

Getting started

Package details

Bioconductor views DNAMethylation Epigenetics NucleosomePositioning PrincipalComponent SingleCell Visualization
Maintainer
LicenseGPL-2
Version1.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("rhondabacher/methylscaper")
rhondabacher/methylscaper documentation built on June 16, 2021, 3:19 p.m.