rhondabacher/methylscaper: Visualization of Methylation Data

methylscaper is an R package for processing and visualizing data jointly profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The package supports both single-cell and single-molecule data, and a common interface for jointly visualizing both data types through the generation of ordered representational methylation-state matrices. The Shiny app allows for an interactive seriation process of refinement and re-weighting that optimally orders the cells or DNA molecules to discover methylation patterns and nucleosome positioning.

Getting started

Package details

Bioconductor views DNAMethylation Epigenetics NucleosomePositioning PrincipalComponent SingleCell Visualization
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
rhondabacher/methylscaper documentation built on June 16, 2021, 3:19 p.m.