methyl_percent_sites: Calculates the percentage of methylated cells/molecules per...

In rhondabacher/methylscaper: Visualization of Methylation Data

Calculates the percentage of methylated cells/molecules per site

Description

Calculates the percentage of methylated cells/molecules per site

Usage

methyl_percent_sites(orderObject, makePlot = TRUE, ...)

Arguments

orderObject	An object of class orderObject
makePlot	Logical, indicates whether to generate the percentage plot
...	Additional parameters used by the plot function.

Value

The percent of molecules or cells methylated (endogenous (yellow) or accessible) at each site. Output is a list with names "red" and "yellow". Red represents the endogenous methylation and yellow represents the accessibility. Within each list object is a vector of the percent of cells/molecules methylated. The location of the site is also represent in the form CXX, where XX is the position of the site within the defined region.

Examples

 
data(singlemolecule_example)

orderObj <- initialOrder(singlemolecule_example, Method = "PCA")
methyl_percent_sites(orderObj, makePlot = TRUE)

rhondabacher/methylscaper documentation built on April 18, 2023, 1:47 p.m.