singlecell_subset: Example preprocessed single-cell experiment subset

In rhondabacher/methylscaper: Visualization of Methylation Data

Example preprocessed single-cell experiment subset

Description

This data is from GSE109262, and has been pre-processed by methylscaper It contains a small subset of chromosome 19 region from 8947041bp - 8987041bp. The RDS in ext data was made specifically with the two commands: singlecell_subset <- subsetSC("~/Downloads/GSE109262_RAW/", chromosome="19", startPos = 8967041-20000, endPos = 8967041+20000, updateProgress = NULL) saveRDS(singlecell_subset, file="methylscaper/inst/ext/singlecell_subset.rds", compress = 'xz') A version is also saved as RData used running examples in the man pages. save(singlecell_subset, file="methylscaper/data/singlecell_subset.RData", compress = 'xz')

Usage

data(singlecell_subset)

Format

An object of class list of length 2.

rhondabacher/methylscaper documentation built on April 18, 2023, 1:47 p.m.