methyl_average_status: Calculate the average methylation/accessibility status across...

In rhondabacher/methylscaper: Visualization of Methylation Data

Calculate the average methylation/accessibility status across all cells/molecules.

Description

Calculate the average methylation/accessibility status across all cells/molecules.

Usage

methyl_average_status(orderObject, window_length = 20, makePlot = TRUE, ...)

Arguments

orderObject	An object of class orderObject
window_length	Length of the window to be used to compute a moving average. Default is 20.
makePlot	Logical, indicates whether to generate a line plot of average status.
...	Addition parameters used by the plot function.

Value

The proportion of methylated bases for each cell/molecule within a defined moving window. Output is a list with elements "meth_avg" and "acc_avg", indicating endogenous or accessible methylation respectively.

Examples

data(singlemolecule_example)

orderObj <- initialOrder(singlemolecule_example, Method = "PCA")
methyl_average_status(orderObj, makePlot = TRUE)

rhondabacher/methylscaper documentation built on Oct. 10, 2024, 8:18 a.m.