beta_div_fcm | Beta diversity function for FCM data |
CoolingTower | Flow cytometric fingerprint of cooling water microbial... |
cum_Richness | Cumulative Richness function for FCM data |
CV | Calculating coefficient of variance (CV) of fingerprints from... |
Diversity | Diversity function for FCM data |
Diversity_16S | Diversity function for 16S amplicon data |
Diversity_gmm | Unsupervised calculation of phenotypic diversity on gaussian... |
Diversity_rf | Diversity_rf function for FCM data |
Evenness | Evenness function for FCM data |
export_csv | Exports the flow cytometric fingerprint or raw data to CSV. |
FCS_clean | FCS_clean function for FCM data |
FCS_pool | Function to pool FCS files based on sample name patterns |
FCS_resample | Resampling function for flowSet objects |
flowData | Flow cytometry test data of a cooling water microbial... |
flowData_ax | Flow cytometry test data of 2 axenic bacterial strains |
flowData_transformed | Flow cytometry test data of a cooling water microbial... |
fp_contrasts | Returns contrasts between fingerprints |
Log | Small function for printing progress of parallel processes |
PhenoGMM | Train GMM-fitted model to FCS data. |
PhenoMaskGMM | Apply PhenoGMM made model to new data. |
PhTrans | Small function for normalizing channels based on maximum... |
physeq_test | Microbial community composition based on the V3-V4 16S... |
plot_beta_fcm | Plot function for beta diversity analysis of FCM data |
RandomF_FCS | Random Forest classifier for supervised demarcation of groups... |
RandomF_predict | Predict cell labels based on a model constructed using... |
So | Structural organisation (So) for FCM data based on Koch et... |
time_discretization | Time discretization function for FCM data |
trip | Small (inefficient) function for taking mean/sd |
trip_col | Small (inefficient) function for extracting sample names... |
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