Man pages for rprops/Phenoflow_package
Advanced analysis of microbial flow cytometry data
| beta_div_fcm | Beta diversity function for FCM data |
| CoolingTower | Flow cytometric fingerprint of cooling water microbial... |
| cum_Richness | Cumulative Richness function for FCM data |
| CV | Calculating coefficient of variance (CV) of fingerprints from... |
| Diversity | Diversity function for FCM data |
| Diversity_16S | Diversity function for 16S amplicon data |
| Diversity_gmm | Unsupervised calculation of phenotypic diversity on gaussian... |
| Diversity_rf | Diversity_rf function for FCM data |
| Evenness | Evenness function for FCM data |
| export_csv | Exports the flow cytometric fingerprint or raw data to CSV. |
| FCS_clean | FCS_clean function for FCM data |
| FCS_pool | Function to pool FCS files based on sample name patterns |
| FCS_resample | Resampling function for flowSet objects |
| flowData | Flow cytometry test data of a cooling water microbial... |
| flowData_ax | Flow cytometry test data of 2 axenic bacterial strains |
| flowData_transformed | Flow cytometry test data of a cooling water microbial... |
| fp_contrasts | Returns contrasts between fingerprints |
| Log | Small function for printing progress of parallel processes |
| PhenoGMM | Train GMM-fitted model to FCS data. |
| PhenoMaskGMM | Apply PhenoGMM made model to new data. |
| PhTrans | Small function for normalizing channels based on maximum... |
| physeq_test | Microbial community composition based on the V3-V4 16S... |
| plot_beta_fcm | Plot function for beta diversity analysis of FCM data |
| RandomF_FCS | Random Forest classifier for supervised demarcation of groups... |
| RandomF_predict | Predict cell labels based on a model constructed using... |
| So | Structural organisation (So) for FCM data based on Koch et... |
| time_discretization | Time discretization function for FCM data |
| trip | Small (inefficient) function for taking mean/sd |
| trip_col | Small (inefficient) function for extracting sample names... |
