Man pages for rprops/Phenoflow_package
Advanced analysis of microbial flow cytometry data

beta_div_fcmBeta diversity function for FCM data
CoolingTowerFlow cytometric fingerprint of cooling water microbial...
cum_RichnessCumulative Richness function for FCM data
CVCalculating coefficient of variance (CV) of fingerprints from...
DiversityDiversity function for FCM data
Diversity_16SDiversity function for 16S amplicon data
Diversity_rfDiversity_rf function for FCM data
EvennessEvenness function for FCM data
export_csvExports the flow cytometric fingerprint or raw data to CSV.
FCS_cleanFCS_clean function for FCM data
FCS_poolFunction to pool FCS files based on sample name patterns
FCS_resampleResampling function for flowSet objects
flowDataFlow cytometry test data of a cooling water microbial...
flowData_axFlow cytometry test data of 2 axenic bacterial strains
fp_contrastsReturns contrasts between fingerprints
LogSmall function for printing progress of parallel processes
PhTransSmall function for normalizing channels based on maximum...
physeq_testMicrobial community composition based on the V3-V4 16S...
plot_beta_fcmPlot function for beta diversity analysis of FCM data
RandomF_FCSRandom Forest classifier for supervised demarcation of groups...
RandomF_predictPredict cell labels based on a model constructed using...
SoStructural organisation (So) for FCM data based on Koch et...
time_discretizationTime discretization function for FCM data
tripSmall (inefficient) function for taking mean/sd
trip_colSmall (inefficient) function for extracting sample names...
rprops/Phenoflow_package documentation built on April 29, 2018, 3:12 p.m.