FCS_pool: Function to pool FCS files based on sample name patterns

In rprops/Phenoflow_package: Advanced analysis of microbial flow cytometry data

Description

This function pools samples based on sample name patterns

Usage

FCS_pool(x, stub)

Arguments

x

flowSet object containing the flowframes to merge

stub

A vector of patterns by which to pool FCS files (e.g. replicates). For example: providing the pattern "CYCLUS1_BEKKEN_0_4h_SYBR_START" will merge all flowframes containing this pattern in their sample name. **Notice**: You will have to provide a vector containing all the patterns to merge with in case you want the full flowSet merged. For example: for stub = c("CYCLUS1_BEKKEN_0_4h_SYBR_START", "CYCLUS1_BEKKEN_0_10h_SYBR_START") 'FCS_pool“ will **only** merge the samples containing those patterns, and it will merge them per unique pattern.

rprops/Phenoflow_package documentation built on Sept. 22, 2020, 5:43 p.m.