FCS_resample: Resampling function for flowSet objects

In rprops/Phenoflow_package: Advanced analysis of microbial flow cytometry data

Description

This function resamples each sample to an equal number of cells. Options are to resample with or withour replacement, and to resample on a per sample basis or across the entire dataset (normalization to equal sample size).

Usage

FCS_resample(x, sample = 0, replace = FALSE, rarefy = FALSE, progress = TRUE)

Arguments

x	flowSet object.
sample	Desired sample size. Defaults to minimum sample size.
replace	Do you want to resample with or without replacement? Defaults to FALSE, which is without replacement.
rarefy	Do you want each sample resampled without adjusting sample size? Default to FALSE.
progress	Should progress be reported? Defaults to yes.

Examples

# Load raw data (imported using flowCore)
data(flowData)
flowData <- FCS_resample(flowData, replace=TRUE)

rprops/Phenoflow_package documentation built on Sept. 22, 2020, 5:43 p.m.