saezlab/CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.
Getting started
Browse package contents
Package details |
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| Bioconductor views | GeneExpression Network Transcriptomics |
| Maintainer | |
| License | GPL-3 |
| Version | 2.7.2 |
| URL | https://github.com/saezlab/CARNIVAL |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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