prepareForCarnivalRun: Prepares ILP formulation and writes it to .lp file....

In saezlab/CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Prepares ILP formulation and writes it to .lp file. Currently supports the old data representation (CARNIVAL v.<2) for debugging and testing if any problems arise with the new way to generate variables.

Description

Prepares ILP formulation and writes it to .lp file. Currently supports the old data representation (CARNIVAL v.<2) for debugging and testing if any problems arise with the new way to generate variables.

Usage

prepareForCarnivalRun(
  dataPreprocessed,
  carnivalOptions,
  newDataRepresentation = TRUE
)

Arguments

dataPreprocessed	list containing preprocessed priorKnowledgeNetwork, measurements, weights (if provided), perturbations (if provided).
carnivalOptions	all options of CARNIVAL.
newDataRepresentation	TRUE by default. For debugging with the old data representation, put to FALSE.

Value

list with all variables and ILP formulation written in .lp file.

saezlab/CARNIVAL documentation built on Jan. 17, 2024, 5:10 p.m.