solveCarnival: Main CARNIVAL function to execute the full pipeline: 1)...

In saezlab/CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Main CARNIVAL function to execute the full pipeline: 1) preprocess the data 2) prepare ILP formulation 3) executes the solver on ILP formulation 4) parse the output of the solver and map it to the original data.

Description

Main CARNIVAL function to execute the full pipeline: 1) preprocess the data 2) prepare ILP formulation 3) executes the solver on ILP formulation 4) parse the output of the solver and map it to the original data.

Usage

solveCarnival(dataPreprocessed, carnivalOptions, newDataRepresentation = TRUE)

Arguments

dataPreprocessed	list containing preprocessed priorKnowledgeNetwork, measurements, weights (if provided), perturbations (if provided).
carnivalOptions	all options of CARNIVAL.
newDataRepresentation	TRUE by default. For debugging with the old data representation, put to FALSE.

Value

solution of the ILP problem.

saezlab/CARNIVAL documentation built on Jan. 17, 2024, 5:10 p.m.