processSolution: Exports the solution matrix to the final solution.

In saezlab/CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Exports the solution matrix to the final solution.

Description

Exports the solution matrix to the final solution.

Usage

processSolution(
  solutionMatrix,
  variables,
  dataPreprocessed,
  carnivalOptions,
  newDataRepresentation = TRUE
)

Arguments

solutionMatrix	the output matrix from ILP solver containing variables list (rows) and their values in different solutions (columns).
variables	list of nodes, edges and measurements variables generated by createLpFormulation_v2.
dataPreprocessed	list containing preprocessed priorKnowledgeNetwork, measurements, weights (if provided), perturbations (if provided).
carnivalOptions	all options of CARNIVAL.
newDataRepresentation	TRUE by default. For debugging with the old data representation, put to FALSE.

Value

Carnival results exported from the solution matrix. see runCARNIVAL for details.

saezlab/CARNIVAL documentation built on Jan. 17, 2024, 5:10 p.m.