A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

AddPerturbationNode | 'AddPerturbationNode' |

all_constraints_wLoop | 'all_constraints_wLoop' |

assignPROGENyScores | 'assignPROGENyScores' |

buildDataMatrix | 'buildDataMatrix' |

create_variables_all | 'create_variables_all' |

enrichCARNIVAL | 'enrichCARNIVAL' |

exportResult | 'exportResult' |

files2res | 'files2res' |

generate_measfile | 'generate_measfile' |

GeneSymbol2Uniprot | 'GeneSymbol2Uniprot' |

load_CARNIVAL_examples | 'load_CARNIVAL_examples' |

mapUniprotPKN | 'mapUniprotPKN' |

runCARNIVAL | 'runCARNIVAL' |

runDoRothEA | 'runDoRothEA' |

runPROGENy | 'runPROGENy' This function is designed to compute progeny... |

Uniprot2GeneSymbol | 'Uniprot2GeneSymbol' |

write_binaries | 'write_binaries' |

write_boundaries | 'write_boundaries' |

write_constraints_1_all | 'write_constraints_1_all' |

write_constraints_2_all | 'write_constraints_2_all' |

write_constraints_3_all | 'write_constraints_3_all' |

write_constraints_4_all | 'write_constraints_4_all' |

write_constraints_5_all | 'write_constraints_5_all' |

write_constraints_6 | 'write_constraints_6' |

write_constraints_7 | 'write_constraints_7' |

write_constraints_8 | 'write_constraints_8' |

write_constraints_objFunction_all | 'write_constraints_objFunction_all' |

WriteDOTfig | 'WriteDOTfig' |

write_generals | 'write_generals' |

write_loop_constraints | 'write_loop_constraints' |

writeLPFile | 'writeLPFile' |

write_objective_function | 'write_objective_function' |

write_objective_function_all | 'write_objective_function_all' |

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