solveCarnivalFromLp: Sends the ILP formulation defined in .lp file to solver. Uses...

In saezlab/CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Sends the ILP formulation defined in .lp file to solver. Uses parsedDataFile to process the final solution and map the ILP variables back to inital data.

Description

Sends the ILP formulation defined in .lp file to solver. Uses parsedDataFile to process the final solution and map the ILP variables back to inital data.

Usage

solveCarnivalFromLp(
  lpFile = "",
  parsedDataFile = "",
  carnivalOptions,
  newDataRepresentation = TRUE
)

Arguments

lpFile	path to .lp file that will be used to run the solver.
parsedDataFile	path to parsed data file that was created after running prepareForCarnivalRun or in previous CARNIVAL runs.
carnivalOptions	all options of CARNIVAL.
newDataRepresentation	TRUE by default. For debugging with the old data representation, put to FALSE.

Value

solution of ILP problem

saezlab/CARNIVAL documentation built on Jan. 17, 2024, 5:10 p.m.