Man pages for satijalab/azimuth
A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data
| AttachDeps | Attach dependent packages |
| AzimuthApp | Launch the mapping app |
| AzimuthBridgeReference | Create a Seurat object compatible with Azimuth. |
| AzimuthData-class | AzimuthData |
| Azimuth-package | Azimuth: A Shiny App Demonstrating a Query-Reference Mapping... |
| AzimuthReference | Create a Seurat object compatible with Azimuth. |
| AzimuthServer | Server function for the mapping app |
| CategoryTable | Returns a dataframe of the frequency or percentage of levels... |
| ConvertGeneNames | Converts gene names of query to match type/species of... |
| CreateAzimuthData | Create an 'AzimuthData' object |
| CreateColorMap | Create A Color Map |
| FilterFeatures | Sanitize feature names for 'selectInput' |
| FormatDiffTime | Format Time Differences |
| GetColorMap | Get Azimuth color mapping |
| GetCSS | Get Azimuth's CSS file |
| GetPlotRef | Get Azimuth plotref |
| GetTranscripts | Get transcripts modified from Signac::GeneActivity |
| LoadBridgeReference | Load the extended reference RDS file for bridge integration |
| LoadFileInput | Load file input into a 'Seurat' object |
| LoadH5AD | Load a diet H5AD file |
| LoadH5ADobs | Load obs from a H5AD file |
| LoadReference | Load the reference RDS files |
| NNTransform | Transform an NN index |
| PlottableMetadataNames | Return names of metadata columns in a Seurat object that have... |
| ReferenceVersion | Get Azimuth reference version number |
| RenderDiffExp | Prepare differential expression results for rendering |
| RenderDiffMotifExp | Prepare differential expression motif results for rendering |
| RunAzimuth | Run Azimuth annotation |
| RunAzimuthATAC | Run Azimuth annotation for ATAC query |
| SaveAzimuthReference | Save 'Azimuth' references and neighbors index to same folder |
| SetColorMap | Set Azimuth color mapping |
| ValidateAzimuthReference | Validate References for Azimuth |
