CreateAzimuthData: Create an 'AzimuthData' object

In satijalab/azimuth: A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data

Create an AzimuthData object

Description

Create an auxiliary AzimuthData object for storing necessary info when generating an Azimuth reference.

Usage

CreateAzimuthData(
  object,
  plotref = "umap",
  plot.metadata = NULL,
  colormap = NULL,
  reference.version = "0.0.0"
)

Arguments

object	Seurat object
plotref	Either the name of the DimReduc in the provided Seurat object to use for the plotting reference or the DimReduc object itself.
plot.metadata	A data.frame of discrete metadata fields for the cells in the plotref.
colormap	A list of named and ordered vectors specifying the colors and levels for the metadata. See CreateColorMap for help generating your own.
reference.version	Version of the Azimuth reference

Value

Returns an AzimuthData object

satijalab/azimuth documentation built on Nov. 19, 2023, 8:34 a.m.