RenderDiffExp: Prepare differential expression results for rendering

In satijalab/azimuth: A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data

Prepare differential expression results for rendering

Description

Prepare differential expression results for rendering

Usage

RenderDiffExp(diff.exp, groups.use = NULL, n = 10L, logfc.thresh = 0L)

Arguments

diff.exp	A dataframe with differential expression results from presto::wilcoxauc
groups.use	Names of groups to filter diff.exp to; groups must be found in diff.exp$group
n	Number of feature to filter diff.exp to per group
logfc.thresh	logFC threshold

Value

diff.exp, ordered by adjusted p-value, filtered to n features per group in group.use

See Also

wilcoxauc

satijalab/azimuth documentation built on Nov. 19, 2023, 8:34 a.m.