AzimuthApp: Launch the mapping app

In satijalab/azimuth: A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data

Launch the mapping app

Description

Launch the mapping app

Usage

AzimuthApp(config = NULL, ...)

Arguments

config	Path to JSON-formatted configuration file specifying options; for an example config file, see system.file("resources", "config.json", package = "Azimuth")
...	Options to set, see ?`Azimuth-package` for details on Azimuth-provided options

Value

None, launches the mapping Shiny app

Specifying options

R options can be provided as named arguments to AzimuthApp through dots (...), set in a config file, or set globally. Arguments provided to AzimuthApp through dots take precedence if the same option is provided in a config file. Options provided through dots or a config file take precedence if the same option was set globally.

Options in the Azimuth.app namespace can be specified using a shorthand notation in both the config file and as arguments to AzimuthApp. For example, the option Azimuth.app.reference can be shortened to reference in the config file or as an argument to AzimuthApp

See Also

Azimuth-package

Examples

if (interactive()) {
  AzimuthApp(system.file("resources", "config.json", package = "Azimuth"))
}

satijalab/azimuth documentation built on Nov. 19, 2023, 8:34 a.m.