warmup: Run short burnin from multiple independent starts and select...

Description Usage Arguments

Description

Run short burnin from multiple independent starts and select a single model for further MCMC

Usage

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warmup(
  tib,
  model1,
  model2 = NULL,
  model2.penalty = 50,
  Nrep = 10,
  .burnin = 100
)

Arguments

tib

a tibble containing data, sample identifiers, and batch information

model1

Name of model (e.g., "MB3", "MBP3", "SB3", ...)

model2

Second model to evaluate (optional)

model2.penalty

Typically we compare a simple model (SB3) to a more complicated model (MB3). This allows the user to specify a penalty for the more complicated model.

Nrep

Integer specifying number of independent starts

.burnin

Integer specifying number of burnin simulations


scristia/CNPBayes documentation built on Aug. 9, 2020, 7:31 p.m.