Files in sdwfrost/popseq
Population Analysis of Deep Sequencing Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/bamToFasta.R
R/bamTolist.R
R/calc_cons.R
R/ehhR.R
R/ehhsR.R
R/fastaTolist.R
R/flogliksingle.R
R/ldR.R
R/modstr.R
R/modstr_eff.R
R/nucdivR.R
R/pileupFreq.R
R/screen_bam.R
R/screen_bam_eff.R
R/screen_bam_multi.R
R/screen_fasta_eff.R
R/screen_select.R
R/sfsR.R
README.Rmd
README.md
inst/extdata/pig2.1
inst/extdata/pig2.2
inst/extdata/pig2.3
inst/extdata/regions.fas
man/bamToFasta.Rd
man/ehhR.Rd
man/ehhsR.Rd
man/flogliksingle.Rd
man/ldR.Rd
man/nucdivR.Rd
man/pileupFreq.Rd
man/screen_bam.Rd
man/screen_bam_eff.Rd
man/screen_bam_multi.Rd
man/screen_fasta.Rd
man/screen_fasta_eff.Rd
man/screen_select.Rd
man/sfsR.Rd
popseq.Rproj
src/.gitignore
src/check_duplicates.c
src/combin.c
src/functions.h
src/genfullmodels.c
src/genfullmodels_recur.c
src/genmodels.c
src/genmodels_recur.c
src/next_comb.c
src/popseq.dll
src/pow_int.c
src/realloc.c
src/sort.c
tests/testthat.R
tests/testthat/test-ehhR.R
tests/testthat/test-ehhsR.R
tests/testthat/test-flogliksingle.R
tests/testthat/test-ldR.R
tests/testthat/test-nucdivR.R
tests/testthat/test-sfsR.R
vignettes/introduction.Rmd
