nucdivR: A function to calculate the average hamming distance within...

In sdwfrost/popseq: Population Analysis of Deep Sequencing Data

Description

A function to calculate the average hamming distance within each two populations, between two populations and Fst statistic.

Usage

nucdivR(hapmatrix1, hapmatrix2)

Arguments

hapmatrix1	A haplotype matrix with ones (ancestral) and twos (derived).
hapmatrix2	The other haplotype matrix with ones (ancestral) and twos (derived).

Value

The average hamming distance within each two populations, between two populations and Fst statistic.

Author(s)

Fei Xiang ([e-mail])

Examples

exmtx=matrix(sample(2,80,replace=T),ncol=10,nrow=8)
exmtx1=matrix(sample(2,80,replace=T),ncol=10,nrow=8)
nucdivR(exmtx,3-exmtx)
nucdivR(exmtx,exmtx1)

sdwfrost/popseq documentation built on May 29, 2019, 4:23 p.m.