screen_select: A function to identify sites of interestes from a list of...

In sdwfrost/popseq: Population Analysis of Deep Sequencing Data

Description

A function to identify sites of interestes from a list of longitudinal sequence file.

Usage

screen_select(file_list, ref = NULL, priorPA = 0.001)

Arguments

file_list	A list of sequence files.
ref	A referece sequence.
priorPA	Prior assocation to possible models

Value

PPA association for each site.

Author(s)

Fei Xiang ([e-mail])

Examples

pig2.1=system.file("extdata/pig2.1",package = "popseq")
pig2.2=system.file("extdata/pig2.2",package = "popseq")
pig2.3=system.file("extdata/pig2.3",package = "popseq")

ref=system.file("extdata/regions.fas",package = "popseq")

pig2=list(pig2.1,pig2.2,pig2.3)

screen_select(pig2,ref=ref)

sdwfrost/popseq documentation built on May 29, 2019, 4:23 p.m.