Man pages for sdwfrost/popseq
Population Analysis of Deep Sequencing Data

bamToFastaWrites a BAM file to a file in FASTA format
ehhRA function to calculate EHH (Extended Haplotype Homozygosity)...
ehhsRA function to calculate EHHs (site Extended Haplotype...
flogliksingleA function to calculate loglikelihood of a single locus...
ldRA function to calculate Kelly's Zns statistic and the...
nucdivRA function to calculate the average hamming distance within...
pileupFreqConverts a pileup to a dataframe of nucleotide frequencies
screen_bamA function to identify sites of interestes from a list of...
screen_bam_effAn efficient function to identify sites of interestes from a...
screen_bam_multiAn efficient function to identify sites of interestes from a...
screen_fastaA function to identify sites of interestes from a list of...
screen_fasta_effA efficient function to identify sites of interestes from a...
screen_selectA function to identify sites of interestes from a list of...
sfsRA function to calculate Tajima's D and Fay and WU's H...
sdwfrost/popseq documentation built on Aug. 4, 2017, 7:21 p.m.