ehhR: A function to calculate EHH (Extended Haplotype Homozygosity)...
In sdwfrost/popseq: Population Analysis of Deep Sequencing Data

A function to calculate EHH (Extended Haplotype Homozygosity) given a focal SNPs and a haplotype matrix.

1	ehhR(hapmatrix, site)

`hapmatrix`	A haplotype matrix with ones (ancestral) and twos (derived).
`site`	A specific site.

EHH (Extended Haplotype Homozygosity).

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exmtx=matrix(sample(2,80,replace=T),ncol=10,nrow=8)
ehhR(exmtx,2)
ehhR(exmtx,4)

sdwfrost/popseq documentation built on May 29, 2019, 4:23 p.m.

sdwfrost/popseq index

README.md

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