screen_fasta_eff: A efficient function to identify sites of interestes from a...

Description Usage Arguments Value Author(s) Examples

View source: R/screen_fasta_eff.R

Description

A efficient function to identify sites of interestes from a list of longitudinal sequence file.

Usage

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screen_fasta_eff(file_list, ref = NULL, priorPA = 0.001)

Arguments

file_list

A list of fasta files.

ref

A referece sequence.

priorPA

Prior assocation to possible models

Value

PPA association for each site.

Author(s)

Fei Xiang ([email protected])

Examples

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pig2.1=system.file("extdata/pig2.1",package = "popseq")
pig2.2=system.file("extdata/pig2.2",package = "popseq")
pig2.3=system.file("extdata/pig2.3",package = "popseq")

ref=system.file("extdata/regions.fas",package = "popseq")

pig2=list(pig2.1,pig2.2,pig2.3)

screen_select(pig2,ref=ref)

sdwfrost/popseq documentation built on Aug. 4, 2017, 7:21 p.m.