Description Usage Arguments Value Author(s) Examples
View source: R/screen_fasta_eff.R
A efficient function to identify sites of interestes from a list of longitudinal sequence file.
1 | screen_fasta_eff(file_list, ref = NULL, priorPA = 0.001)
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file_list |
A list of fasta files. |
ref |
A referece sequence. |
priorPA |
Prior assocation to possible models |
PPA association for each site.
Fei Xiang (xf3087@gmail.com)
1 2 3 4 5 6 7 8 9 | pig2.1=system.file("extdata/pig2.1",package = "popseq")
pig2.2=system.file("extdata/pig2.2",package = "popseq")
pig2.3=system.file("extdata/pig2.3",package = "popseq")
ref=system.file("extdata/regions.fas",package = "popseq")
pig2=list(pig2.1,pig2.2,pig2.3)
screen_select(pig2,ref=ref)
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