Man pages for sdwfrost/popseq
Population Analysis of Deep Sequencing Data
| bamToFasta | Writes a BAM file to a file in FASTA format |
| ehhR | A function to calculate EHH (Extended Haplotype Homozygosity)... |
| ehhsR | A function to calculate EHHs (site Extended Haplotype... |
| flogliksingle | A function to calculate loglikelihood of a single locus... |
| ldR | A function to calculate Kelly's Zns statistic and the... |
| nucdivR | A function to calculate the average hamming distance within... |
| pileupFreq | Converts a pileup to a dataframe of nucleotide frequencies |
| screen_bam | A function to identify sites of interestes from a list of... |
| screen_bam_eff | An efficient function to identify sites of interestes from a... |
| screen_bam_multi | An efficient function to identify sites of interestes from a... |
| screen_fasta | A function to identify sites of interestes from a list of... |
| screen_fasta_eff | A efficient function to identify sites of interestes from a... |
| screen_select | A function to identify sites of interestes from a list of... |
| sfsR | A function to calculate Tajima's D and Fay and WU's H... |
