SpatialPCA_highresolution: High-resolution spatial map construction.

In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics

High-resolution spatial map construction.

Description

High-resolution spatial map construction.

Usage

SpatialPCA_highresolution(object, platform = "ST", newlocation = NULL)

Arguments

object	SpatialPCA object.
platform	"ST": the 10X ST platform, impute 9 subspots in a square shape for each spot; "Visium": the 10X Visium platform, impute 6 subspots in a hexagonal shape for each spot;
newlocation	A n* by d location matrix, n* is number of new locations, d is dimension of locations. Users can optionally provide new locations at the original location scale.

Value

Returns SpatialPCA object with estimated Spatial PCs on new locations.

shangll123/SpatialPCA documentation built on April 17, 2024, 3:15 a.m.