walktrap_clustering: Obtain clustering cluster labels through walktrap method.
In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics
View source: R/SpatialPCA_utilties.R
walktrap_clustering R Documentation
Obtain clustering cluster labels through walktrap method.
Description
This function performs walktrap clustering on input low dimensional components.
Usage
walktrap_clustering(clusternum, latent_dat, knearest = 100)
Arguments
clusternum
The desired number of clusters the user wants to obtain.
latent_dat
A d by n matrix of low dimensional components, d is number of PCs, n is number of spots.
knearest
An integers, number of nearest neighbors for SNN graph construction in walktrap clustering.
Value
The cluster labels.
shangll123/SpatialPCA documentation built on June 1, 2025, 6:03 p.m.
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View source: R/SpatialPCA_utilties.R
| walktrap_clustering | R Documentation |
Obtain clustering cluster labels through walktrap method.
Description
This function performs walktrap clustering on input low dimensional components.
Usage
walktrap_clustering(clusternum, latent_dat, knearest = 100)
Arguments
clusternum |
The desired number of clusters the user wants to obtain. |
latent_dat |
A d by n matrix of low dimensional components, d is number of PCs, n is number of spots. |
knearest |
An integers, number of nearest neighbors for SNN graph construction in walktrap clustering. |
Value
The cluster labels.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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