walktrap_clustering: Obtain clustering cluster labels through walktrap method.

In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics

Obtain clustering cluster labels through walktrap method.

Description

This function performs walktrap clustering on input low dimensional components.

Usage

walktrap_clustering(clusternum, latent_dat, knearest = 100)

Arguments

clusternum	The desired number of clusters the user wants to obtain.
latent_dat	A d by n matrix of low dimensional components, d is number of PCs, n is number of spots.
knearest	An integers, number of nearest neighbors for SNN graph construction in walktrap clustering.

Value

The cluster labels.

shangll123/SpatialPCA documentation built on June 1, 2025, 6:03 p.m.